Integer Programming-Based Approach to Attractor Detection and Control of Boolean Networks
Tatsuya AKUTSU Yang ZHAO Morihiro HAYASHIDA Takeyuki TAMURA 
Publication:   IEICE TRANSACTIONS on Information and Systems
Publication Date: 2012/12/01
Vol. E95-D  No. 12  pp. 2960-2970
Type of Manuscript:  PAPER
Category: Fundamentals of Information Systems
Boolean networksgenetic networksattractorsinteger programmingnonlinear discrete systems
 Summary | Full Text:PDF(425.8KB)

Measuring the Similarity of Protein Structures Using Image Compression Algorithms
Morihiro HAYASHIDA Tatsuya AKUTSU 
Publication:   IEICE TRANSACTIONS on Information and Systems
Publication Date: 2011/12/01
Vol. E94-D  No. 12  pp. 2468-2478
Type of Manuscript:  PAPER
Category: Artificial Intelligence, Data Mining
image compressionuniversal similarity metricprotein structure comparison
 Summary | Full Text:PDF(893.5KB)

Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints
Tatsuya AKUTSU Morihiro HAYASHIDA Dukka Bahadur K.C. Etsuji TOMITA Jun'ichi SUZUKI Katsuhisa HORIMOTO 
Publication:   IEICE TRANSACTIONS on Fundamentals of Electronics, Communications and Computer Sciences
Publication Date: 2006/05/01
Vol. E89-A  No. 5  pp. 1215-1222
Type of Manuscript:  Special Section PAPER (Special Section on Discrete Mathematics and Its Applications)
maximum edge weight cliquedynamic programmingprotein threadingprofilesdistance constraints
 Summary | Full Text:PDF(305.8KB)